{"dep": 1, "title": "Zenodotus' Book-Burning: Loud Exclusion at Repository Scale", "date": "2026-06-19", "para": 160, "sent": 460, "sentence": "The TRUST and FAIR principles are the framework that platform governance claims to embody.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["the framework"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0001"}
{"dep": 106, "title": "Semantic Physics: A Stratified, Operative Discipline — Scales, Modalities, and the Diagnostic–Constructive Continuum", "date": "2026-05-15", "para": 222, "sent": 629, "sentence": "From archive theory and library science: FAIR principles, DOI infrastructure, PROV-O, schema.org, the provenance studies tradition.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["library science", "provenance studies"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0002"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 43, "sent": 119, "sentence": "**Nanopublications and Micropublications.** The nanopublication paradigm (Mons and Velterop, 2009; Kuhn et al., 2013–) decomposes scientific claims into machine-readable named graphs consisting of assertion, provenance, and publication metadata — individual scientific claims made distinctive, identifiable, citable, and reusable.", "alias": ["\\bnano-?pub(lication)?s?\\b", "\\bMons (and|&) Velterop\\b"], "kind": "O-direct", "categories": ["Nanopublications and Micropublications"], "cand_id": "O0003"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 48, "sent": 131, "sentence": "The born-readable movement, the nanopublication paradigm, the FAIR infrastructure community, and the Agentic Publications framework all treat machine-readability primarily as data architecture.", "alias": ["\\bnano-?pub(lication)?s?\\b"], "kind": "O-direct", "categories": ["Agentic Publications", "Agentic Publications framework"], "cand_id": "O0004"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 85, "sent": 234, "sentence": "Training-layer literature does not replace citations; it augments them with machine-traversable claim-level provenance chains that explicitly link each claim to its evidential support without requiring the reader to retrieve and parse the cited source.", "classes": ["provenance for individual assertions"], "kind": "O-class", "categories": ["does not", "Training-layer", "Training-layer literature"], "class_basis": {"provenance for individual assertions": "field: B1 (nanopub.net, home: 'Provenance : This part describes how the assertion above came to be.'); B6 (Abstract: 'a minimal, uniform container making individual semantic assertions and their associated provenance metadata, machine-actionable'); B4 (IEEE Xplore card title 'A Growing Resource of Provenance'); the census's provenance_object 'an assertion' (PE record)"}, "cand_id": "O0005"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 108, "sent": 291, "sentence": "Its structural decomposition of claims, explicit provenance chains, and machine-first design satisfy FAIR principles more thoroughly than traditional papers retrofitted for machine-readability.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["for machine"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0006"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 131, "sent": 345, "sentence": "A pilot study deploying these metrics across (a) traditional papers, (b) FAIR/nanopublication-augmented papers, and (c) training-layer publications composed under the present protocols would provide the empirical baseline the genre currently lacks.", "alias": ["\\bnano-?pub(lication)?s?\\b"], "kind": "O-direct", "categories": ["training-layer"], "cand_id": "O0007"}
{"dep": 176, "title": "Protocols for Scientific Training-Layer Literature: Machine-Mediated Research at the Production and Reception Ends (EA-SCI-TLL-PROTO-01 v2.1)", "date": "2026-06-09", "para": 177, "sent": 477, "sentence": "- claim_id: \"sci-tll-05\" statement: \"Existing machine-readable science initiatives address machine reception primarily as data architecture; the underlying problem also requires a poetics of composition, genre, attribution, and interpretive behavior.\" type: \"structural critique / gap identification\" scope: \"Existing FAIR, nanopublication, knowledge-graph, and agentic-publication initiatives\" epistemic_status: \"well-supported by survey of existing literature\" evidence: - \"Jaradeh et al. 2025 (born-readable / reborn approach)\" - \"Clark et al. 2014 (micropublications)\" - \"Hahnel 2025 (Machine-first FAIR)\" - \"Pugliese et al. 2026 (Agentic Publications)\" challenge_conditions: - \"If any existing initiative is shown to incorporate explicit compositional theory comparable to training-layer literature's, the gap claim should be revised to relative rather than absolute novelty.\"", "alias": ["\\bnano-?pub(lication)?s?\\b"], "kind": "O-direct", "categories": ["Agentic Publications", "Machine-first FAIR", "training-layer", "training-layer literature"], "cand_id": "O0008"}
{"dep": 510, "title": "Semantic Physics: The Inward Turn, Competing Ontologies, and the Convergence Horizon I. The Layer You Didn't Know Was Writable", "date": "2026-02-24", "para": 28, "sent": 91, "sentence": "The FAIR principles — findable, accessible, interoperable, reusable — are not just best practices for open science.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["best practices"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0009"}
{"dep": 833, "title": "The Summarizer as Horizon of Reception: The AI Overview Capture Registry as a Founding Dataset for Machine-Mediated Reception Studies (EA-SEI-MMRS-DATASET-01 v1", "date": "2026-06-15", "para": 86, "sent": 268, "sentence": "For *information science*, the dataset provides empirical evidence that provenance, attribution, and disambiguation have measurable reception consequences that existing metadata standards (Dublin Core, FAIR principles, C2PA) do not address.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["empirical evidence", "information science"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0010"}
{"dep": 868, "title": "DOIs ≠ Persistent Identifiers: 871 Cases of Public Metadata Erasure and Identifier Severance in DataCite (EA-MPAI-DOI-IMPERMANENCE-01)", "date": "2026-06-22", "para": 17, "sent": 37, "sentence": "The DOI Foundation states: \"A DOI is a permanent identifier.\" DataCite's documentation describes DOIs as \"persistent identifiers\" that ensure \"long-term access.\" Zenodo's documentation states that deposited works receive DOIs \"to make them permanently citable.\" The FAIR principles (Wilkinson et al. 2016) list persistent identifiers as Findability condition F1.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["long-term"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0011"}
{"dep": 875, "title": "Governance Dissociation in FAIR Infrastructure: The OpenAIRE Disclaimer as Documentary Artifact", "date": "2026-06-22", "para": 62, "sent": 121, "sentence": "The DOI is not persistent because (a) the substrate can be removed (identifier severance) and (b) the removal cannot be appealed across the FAIR infrastructure that recommended the substrate (governance dissociation).", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["governance dissociation", "identifier severance"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0012"}
{"dep": 875, "title": "Governance Dissociation in FAIR Infrastructure: The OpenAIRE Disclaimer as Documentary Artifact", "date": "2026-06-22", "para": 79, "sent": 161, "sentence": "What this paper does is preserve the documentary artifact of *how* the FAIR infrastructure responded to the request to review the decision, and to name the structural pattern that response demonstrates.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["this paper"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0013"}
{"dep": 875, "title": "Governance Dissociation in FAIR Infrastructure: The OpenAIRE Disclaimer as Documentary Artifact", "date": "2026-06-22", "para": 79, "sent": 163, "sentence": "The problem is that the same FAIR infrastructure has, for years, marketed itself to researchers as if that architectural reality did not exist — as if the recommendation of Zenodo as a trustworthy repository carried with it any commitment, anywhere in the chain, to defend the researcher's persistent identifiers against revocation.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["the chain", "The problem"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0014"}
{"dep": 876, "title": "OpenAIRE Helpdesk Exchange — Documentary Thread for #875", "date": "2026-06-22", "para": 32, "sent": 136, "sentence": "It demonstrates the architectural shape of governance dissociation: a researcher with a complaint cannot escalate it across the FAIR infrastructure that recommended the failing component, because each layer of the infrastructure can plausibly disclaim authority over the failure while the persistence claim remains in force at the marketing layer.", "classes": ["FAIR data containers"], "kind": "O-class", "categories": ["governance dissociation"], "class_basis": {"FAIR data containers": "field: B1 (nanopub.net, home: 'FAIR data containers for scientific results, and more'); B6 (Schultes et al., RIO 8: e94150, Abstract: nanopublication and the FAIR Digital Object Framework 'act as instances of Machine-Actionable Containers (MACs) that make use of minimal uniform standards to enable FAIR operations'); B8 (nanopub 1.2.11 docs: 'nanopublications are an effective FAIR means of communicating scientific claims and results')"}, "cand_id": "O0015"}
{"dep": 1529, "title": "The Claim Status Packet: Claim State as Carried Data", "date": "2026-08-21", "para": 66, "sent": 104, "sentence": "**Integrity hashes sit across all five.** The decomposition follows nanopublication practice — assertion, provenance of assertion, publication information kept as separate graphs — which is the closest existing analogue and solves the conflation directly.", "alias": ["\\bnano-?pub(lication)?s?\\b"], "kind": "O-direct", "categories": ["all five"], "cand_id": "O0016"}